rs38455419 SNP Detail

Summary

• ID
  rs38455419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72974744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCTCAC CTTATTTATG
  CCTAGATAAC TTAGAAAGCC CGTCAAACAT TGATTGTAAG TTAATTGGAA ATGACAAGGA
  TATACTTGTT TTGCTGTTGT ACTTTAAATT GCCCGTGTTT CATCCAGCTC TGCCTTTAGT
  TTTCTGTGCT TTAACATTCT GAGAAAAGAT TGCTTTTATG GTCCGAATGC AAATTATTGT
  R
  TGAGGTGACT AAATTGGCAC AAGGTGCATA GTCTTATAAA TATGGATGCT TTCCATCCAG
  GGTTGTATGT GATGTTCCTG GTAGTTTTAA CAGGAGAGTT ATGACTGTGA GTTTACGTGA
  CAAACAAACC AGAAAAGTGA AACACGCAAA GGTTCAGAAA TACGTGTTAA CAAGTGAGGC
  TGGAATTACT TATTATCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50986072	NES13919713	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38455419					SNP	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986072	NES13919713	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72974744 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	within coordinates
Gm38353	predicted gene, 38353	within coordinates
Rr578299	regulatory region 578299	1050 bp distal
Rr578300	regulatory region 578300	1116 bp distal
Rr578301	regulatory region 578301	747 bp distal
Tssr29555	transcription start site region 29555	1082 bp downstream
Tssr29556	transcription start site region 29556	1067 bp downstream
Tssr29557	transcription start site region 29557	1052 bp downstream