rs38457279 SNP Detail

Summary

• ID
  rs38457279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10836620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGACC GACAGCCCCA
  GGTCATTGCG GTCGTAGAGC TCGGCTGGGG CCAAAGTGTG GTCAGAGAAG GACAGCCACA
  GGGAGAGGGC CACCTCCTGC AGGGCACACG GACACAAGCA GAGACACGCG AGGGCACGCA
  CGCATGCACA CACAGAACAC TCCCACAGTG ACAGGCCACA CGGAAGAAAG AGCACGGAGG
  R
  AAGAGAGACA CAGGCGAATG GACAAAACAC AGGGAGAGAG GGGACGCGTG TCAATCACCT
  GTCTGCCACT CAGCCCAGGG GTCTGAGTCC TCAGGAACAC CTAATGAACC TCCCAACGCC
  ATACTCCAGC CAGCCACTGC TTCATCACTT CCAGCCAGAG AACTCACTAC CTCACAGGGA
  AGTAGTCCTT ATTTGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50599530	NES13639226	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38457279					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50599530	NES13639226	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10836620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10623	CpG island 10623	67 bp distal
Cpgi10624	CpG island 10624	926 bp proximal
Slc15a3	solute carrier family 15, member 3	1341 bp downstream
Tmem132a	transmembrane protein 132A	within coordinates
Tssr155140	transcription start site region 155140	523 bp upstream
Tssr155141	transcription start site region 155141	566 bp upstream
Tssr155142	transcription start site region 155142	631 bp upstream