rs38458376 SNP Detail

Summary

• ID
  rs38458376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATTAAG GTTGATAAGT ACAAAACTGA AAATTCCCTT
  AATCAGCCCT CTGGGACCTT TCAAAATCAT GGCTACACTA TCCCAGTTGT CAACATTGAA
  R
  TATCTCCATT TGCTGTAGAG ACACTGGCTT CCAGCCATGT GATCCCCACA GCAATAAGCA
  CCCCAAGTGT CACAATCCCT GGTCCTAACA TCATGGTGCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50958139	NES14429024	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38458376					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958139	NES14429024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061279 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112654	transcription start site region 112654	1987 bp downstream
Tssr112655	transcription start site region 112655	1964 bp downstream
Tssr112656	transcription start site region 112656	1944 bp downstream
Tssr112657	transcription start site region 112657	1930 bp downstream
Tssr112658	transcription start site region 112658	1897 bp downstream
Tssr112659	transcription start site region 112659	1818 bp downstream
Tssr112660	transcription start site region 112660	1694 bp downstream
Tssr112661	transcription start site region 112661	1459 bp downstream
Tssr112662	transcription start site region 112662	1218 bp downstream
Tssr112663	transcription start site region 112663	977 bp downstream
Tssr112664	transcription start site region 112664	953 bp downstream
Tssr112665	transcription start site region 112665	798 bp downstream
Tssr112666	transcription start site region 112666	778 bp downstream
Tssr112667	transcription start site region 112667	729 bp downstream
Tssr112668	transcription start site region 112668	593 bp downstream
Tssr112669	transcription start site region 112669	506 bp downstream
Tssr112670	transcription start site region 112670	450 bp downstream
Tssr112671	transcription start site region 112671	347 bp downstream
Tssr112672	transcription start site region 112672	223 bp upstream
Tssr112673	transcription start site region 112673	266 bp upstream
Tssr112674	transcription start site region 112674	367 bp upstream
Tssr112675	transcription start site region 112675	394 bp upstream
Tssr112676	transcription start site region 112676	497 bp upstream
Tssr112677	transcription start site region 112677	647 bp upstream
Tssr112678	transcription start site region 112678	771 bp upstream
Tssr112679	transcription start site region 112679	796 bp upstream
Tssr112680	transcription start site region 112680	815 bp upstream
Tssr112681	transcription start site region 112681	862 bp upstream
Tssr112682	transcription start site region 112682	875 bp upstream
Tssr112683	transcription start site region 112683	912 bp upstream
Tssr112684	transcription start site region 112684	956 bp upstream
Tssr112685	transcription start site region 112685	1004 bp upstream
Tssr112686	transcription start site region 112686	1052 bp upstream
Tssr112687	transcription start site region 112687	1132 bp upstream
Tssr112688	transcription start site region 112688	1233 bp upstream
Tssr112689	transcription start site region 112689	1275 bp upstream
Tssr112690	transcription start site region 112690	1300 bp upstream
Tssr112691	transcription start site region 112691	1351 bp upstream
Tssr112692	transcription start site region 112692	1387 bp upstream
Tssr112693	transcription start site region 112693	1406 bp upstream
Tssr112694	transcription start site region 112694	1544 bp upstream
Tssr112695	transcription start site region 112695	1763 bp upstream