rs38460385 SNP Detail

Summary

• ID
  rs38460385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25112096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTAAAT GCTATTTCAC
  CTGATTTACT GTAATTCTGG TGGATTTGAC AGTTTCTGTA TGGAAATTTT CATAATTATA
  ATGATTTCTT AAAGGAAAAA TTGGCTAGGG ATAGGGTTAT ATGTCATAGT CTTTTATCTC
  ACTCATGCAG CATATAAAGC TATGCTACAT TTAGTAAGTT CTGAAACACT GATGCACTAA
  Y
  ATACTTGCAT ATACAGATGC TTACAAATGC ATAGTGTTCC TGTGTACTGA AGTGATGGAT
  GGTGATAAGA TGAACTCCTC CACTACAGTT GGCTAAATTA GAAATATCAG TTCTTTATAC
  ACAAGCCCAA ATGATCATAC TTTCTACTAT AGAAAATGAA AACCGAATTT GACTGAGATG
  TTTCAAGAGT TTCTTGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51566235	NES14861512	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38460385					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566235	NES14861512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25112096 () rs orientation: forward

Symbol	Name	Function Class
Rr379084	regulatory region 379084	within coordinates