rs38460923 SNP Detail

Summary

• ID
  rs38460923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTCGCG ATTTGGCGCC
  ACCGCCGACG CCCCGCCCCC TCCTGGAATA GACACACCCC TTGTCCCGCC CTTATATTCT
  TGGGCTGGTG AAATGGATTT TTTTGGCCTT ACTAACTGCA GGGCCTCTGG GAATCTCAGA
  CCCTGCCTAG GGAGTGAAGT AGGAGTGGTC AGAGTGGGAA CAAGCTTCCT TTATCCCAAA
  M
  GCATTTTCTG AACACTCAGC TTCCCGGACA CTCAGCTACC CTCTTCTACT CTGACTCTAC
  CCAAGCTTCC TGCACCCAGA GTCTTCCCTT CCAGGGCTAT GAGAGTTGTA GAGCCGTTGT
  TTCCCGGTTC TACACATGCT CAGGAAATAC TGTGTTTTCA CCGTTTTCGA TCACTCCCAT
  CCGACCAGTT TTAGTTGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51013763	NES14402728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38460923					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013763	NES14402728	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	76 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	167 bp upstream
Rr403319	regulatory region 403319	48 bp downstream
Rr467012	regulatory region 467012	426 bp distal
Rr467013	regulatory region 467013	within coordinates
Rr467014	regulatory region 467014	150 bp distal
Rr467015	regulatory region 467015	959 bp proximal
Rr467016	regulatory region 467016	1051 bp proximal
Tssr113624	transcription start site region 113624	270 bp upstream
Tssr116494	transcription start site region 116494	178 bp upstream