rs38464321 SNP Detail

Summary

• ID
  rs38464321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146290680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGGAA CACAGGTTAT
  GGAATTTTTC ATTTCAAATA ATTTGAACCC CAACTTCACT GGTGTGGGAG CATGAGAAAT
  TGCACTTTCT ATGCTTTGAT TTTTTTTTCT TTCCTCTCTC AAATAGGCAT ACTCAATGAA
  TCAATGGCAC CGGGAGACTG ACAGACAAGG TGAGGGACTG GTAACAGTAC TGCTTATCAC
  R
  CCATCATTCA ACCCCATGGG AAGGGCCCAG AGGAACAAAA CTCTTGGAAT CTCTGATGCT
  GGAAATCTGG ACACTTCCCT CTAGTTTGGT CTGGGTTGCC TGCCGCGATC AGTAAGCATG
  CAGCGTCAGT CCGTTCTTGA GGCACAGATT CTGCAATCTG TGGTTTCTGA GTTACTTCCA
  TGCAGTAAGT TTAGAATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51537870	NES14870439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38464321					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51537870	NES14870439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146290680 () rs orientation: forward

Symbol	Name	Function Class
Gm38747	predicted gene, 38747	within coordinates