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rs38464321 SNP Detail
Summary
  • ID
    rs38464321
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:146290680 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGGAGGGAA CACAGGTTAT
    GGAATTTTTC ATTTCAAATA ATTTGAACCC CAACTTCACT GGTGTGGGAG CATGAGAAAT
    TGCACTTTCT ATGCTTTGAT TTTTTTTTCT TTCCTCTCTC AAATAGGCAT ACTCAATGAA
    TCAATGGCAC CGGGAGACTG ACAGACAAGG TGAGGGACTG GTAACAGTAC TGCTTATCAC
    R
    CCATCATTCA ACCCCATGGG AAGGGCCCAG AGGAACAAAA CTCTTGGAAT CTCTGATGCT
    GGAAATCTGG ACACTTCCCT CTAGTTTGGT CTGGGTTGCC TGCCGCGATC AGTAAGCATG
    CAGCGTCAGT CCGTTCTTGA GGCACAGATT CTGCAATCTG TGGTTTCTGA GTTACTTCCA
    TGCAGTAAGT TTAGAATAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51537870 NES14870439 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs38464321 SNP G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51537870 NES14870439 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:146290680 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38747 predicted gene, 38747 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory