rs38464534 SNP Detail

Summary

• ID
  rs38464534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187994878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTTGG GTAAATGCAA
  GTTAGCTCTG GTCACAACAT ATGGTGTTCG TGAAAAGAGC TAAAGGATGC TTTACTGCAT
  TAATTAGAGT GGGTGGTGCC AATTCTCTGG GGTCGAGTAA CAGCTCACAG TAGCTGTAAG
  CCTCTACAAC ACACAATCAT CCATAAATAC ACAAACTGAT TGTCCTATAG GTCGATGAGC
  R
  TGATTTGTCC AATAACGTTC AGATCTTTGT CATATTTTTT GACTCTAAGT TGTGTGGTTC
  ATAATGGACT TTGAGAAGTT CTCCATTGTT TTTGTAGGGG GCATCAGATC TTCATGCTTA
  GAATAAACTA TCGATTTCTT GTGTGTTGTT CACCAGGCAC CGGCTTCGAC TCATGTTTCT
  GTCCTCCCTC AGGACACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416334	NES14451683	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38464534					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416334	NES14451683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187994878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	536 bp proximal
Rr425684	regulatory region 425684	1732 bp distal
Rr425685	regulatory region 425685	1970 bp distal
Tssr368	transcription start site region 368	218 bp upstream
Tssr10680	transcription start site region 10680	689 bp downstream
Tssr10681	transcription start site region 10681	653 bp downstream
Ush2a	usherin	157 bp upstream