rs38469279 SNP Detail

Summary

• ID
  rs38469279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATGCTT TTTAAAATTG
  TGGTAAAATA TACATAGCAC AAAACCTTAT CATCTCAACC ACCTTTAAAT GTAAAGTCAG
  GGCAGCTAAA GTCAGGGACA GCAAGTGTAC TGTGCGCCCA TCGCTACCAT CCACATCCAC
  CTTACGGCAA CTCTCCCCTC CCCTTGAATT CTCTTTCTAC CCAATTATGA CATCTTCTAG
  M
  TCCTTCATTA TGAGGGCAGT ACACGCTCTC ACTCTCGTGT TCATCTCCTT TTGAGAGACA
  TTTTCTCTCT TTCTGAAAAC ATAAAACTGT TTAATAGTTC CAAATGTAGA AAGGACCACA
  TAAACCATCT AAAGAATGTT TTAGATGATT ATTAGCCTGA GAGACCTTGA AACAAAATGA
  CTTATTTTAA AACCAGGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674841	NES14008180	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38469279					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674841	NES14008180	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	920 bp proximal
Gm10177	predicted gene 10177	1071 bp downstream
Gm48081	predicted gene, 48081	1246 bp upstream
Gm65989	predicted gene, 65989	887 bp downstream
Rr676656	regulatory region 676656	422 bp proximal
Rr676657	regulatory region 676657	1152 bp proximal
Rr676658	regulatory region 676658	1257 bp proximal
Rr676659	regulatory region 676659	1476 bp proximal
Rr676660	regulatory region 676660	1784 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1105 bp downstream
Tssr88822	transcription start site region 88822	1129 bp downstream
Tssr88823	transcription start site region 88823	1151 bp downstream
Tssr88824	transcription start site region 88824	1177 bp downstream
Tssr88825	transcription start site region 88825	1192 bp downstream
Tssr88826	transcription start site region 88826	1278 bp downstream
Tssr88827	transcription start site region 88827	1371 bp downstream
Tssr88828	transcription start site region 88828	1394 bp downstream
Tssr88829	transcription start site region 88829	1417 bp downstream
Tssr88830	transcription start site region 88830	1433 bp downstream
Tssr88831	transcription start site region 88831	1478 bp downstream