rs38469345 SNP Detail

Summary

• ID
  rs38469345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74604906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCAGAA ATGGTGGGAT
  GATGGTGCAG GCTGTGTGGG GACCCAGATG GTCAGGGATC CGTGGTCAGA AAAGGGGATC
  CCAGTTCTGT CCCACGCAGA TCCTACTGAC CAATCTCCAG GGAGTAGAGC GTAGTCTTGC
  ACATGGTTTC ATTGATGTGG CAGTGGGTGG TGGTGACACA GTTGGATGCA CTCACAGGAT
  Y
  CGCACAGGTG TAGCACTGTA AGGCCATAGC TAGGAGAGGA GGGATGAGAG GGCAGTGAAC
  AGGCCTTCCT GTCTCAAAAG CCCAAAATGT CTTCACCCAA TGTCCTGCTC TGCCATGGAG
  GCTTAGTCTC AGAAGACAAG GACACTAACC AGGGACCAGA TGCCCACTAA CCAAGCTCAG
  GGGAGACAAC ATGACCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss51714858	NES14563502	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs38469345					SNP	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51714858	NES14563502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74604906 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	1824 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	1235 bp downstream
Tssr134736	transcription start site region 134736	1257 bp downstream
Tssr134737	transcription start site region 134737	1301 bp downstream
Tssr134738	transcription start site region 134738	1703 bp downstream