rs38469402 SNP Detail

Summary

• ID
  rs38469402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96038220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGGCAGC CTGTGTTGCC CAGGGTTACC AGGAGCTTCG
  TCCTCACAAT CAGGTTGCAC TGGGCATTGT CTCTGTGATG CTCCTTAGCC TGCAGTTGCC
  Y
  GGAAGGCACG CCCACATCCT TTCTTTTGCC CACTGAGCAG CAGGAGGATA GACGGTTCTT
  ACCTGCCTGT GCACTTGGGC CTGTGCCCTG CAGATGAGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973179	NES14989939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38469402					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973179	NES14989939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96038220 () rs orientation: forward

Symbol	Name	Function Class
Rr178911	regulatory region 178911	1181 bp proximal
Rr185768	regulatory region 185768	1314 bp proximal
Rr191307	regulatory region 191307	21 bp distal
Spmip8	sperm microtubule inner protein 8	within coordinates
Tssr2665	transcription start site region 2665	5 bp downstream
Tssr2666	transcription start site region 2666	4 bp upstream
Tssr2667	transcription start site region 2667	44 bp upstream