rs38469611 SNP Detail

Summary

• ID
  rs38469611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53251915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCGGTCA TCCTTTGCTT
  CACTGTTCTC ATTCAGACGA CCTGCGAAGG AGACTCTAAA ACTTCAGTCT CCGAGACCAA
  ACCGGTGAGT TTAACTCAGG TCATGTGACG CTTTCCCAGG TTATCTAGTA CAGAGGCAAA
  TAGCCCGTTT GGTGTGCAGA ATGTTCGATG TTTGTTCTTA GAATTGAAGT CTGGGTAGTC
  R
  CGAGGAAGCA AACGGTATCT CACTCACTTC AGGACATCTC TTTGAGACTG AAACTTGGCT
  TACCTGAAAG CCAGCTATTT AAGCAACTGC TAACACCCCG GGTGGTGAAC CTGGAGAACC
  ATGGGTTAAA TGTTGGGAAA GAGTTATTGA CATTTGTTCT GCTGAGTCTG GAACAGAGTC
  TGCGCCTTGG CTAGGAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52017509	NES15035599	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38469611					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52017509	NES15035599	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53251915 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Tssr85124	transcription start site region 85124	16 bp upstream
Tssr85125	transcription start site region 85125	445 bp upstream
Tssr85126	transcription start site region 85126	467 bp upstream
Tssr85127	transcription start site region 85127	594 bp upstream
Tssr85128	transcription start site region 85128	612 bp upstream
Tssr85129	transcription start site region 85129	639 bp upstream
Tssr85130	transcription start site region 85130	726 bp upstream
Tssr85131	transcription start site region 85131	1191 bp upstream