rs38470569 SNP Detail

Summary

• ID
  rs38470569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143340106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG AAGCCACCAC TGGTCTTTTC
  Y
  ATTGGAGGCC TCCGTTAACT CACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss51458235	NES13996290	PERLEGEN	MM_PANEL2	f	SNP	T	C	C		T		C
ss322052896	CHEV_6_143342900	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs38470569					SNP	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458235	NES13996290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143340106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18149	CpG island 18149	12 bp proximal
Gm67127	predicted gene, 67127	within coordinates
Rr640842	regulatory region 640842	253 bp distal