rs38470648 SNP Detail

Summary

• ID
  rs38470648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38283860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCATAC TGGTTCACGG
  TAAGCGGAGG CGTCTGACGA CTCCATTATT GCTTAGTACT TAAAGTCGTG CCGAAGTTAT
  GACCTATATT TCTCTCTTAC ATTATAATAG TAAATTTGAT ATTTTTCAAT TAGTGAAATT
  GTGTGGATAA TCTAGACGCG AATTGCACTT TGAATATTAG ACAAAACAGG TATTGCCTAC
  Y
  AGGTGGTAAA AACTGACAGA ATAGTTCGTC TAGAACCAAT GAATTAGATG CAAAGGCGCC
  AAGGACTATA AGAACACCTG ATACTGGCTG GTATTGGGGA GGTAAAATCA GACTTAGGAA
  CAATGTGTAG GGATGGGGGA AGCAAGGAAC TGGTTTAAGT CGTTAGGTAA CGGAGCAAGG
  GAATGTAAAA GCCTACCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288673	NES13775832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38470648					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288673	NES13775832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38283860 () rs orientation: forward

Symbol	Name	Function Class
Gm53283	predicted gene, 53283	within coordinates
Rr628794	regulatory region 628794	1715 bp distal
Tssr60393	transcription start site region 60393	620 bp upstream
Tssr60394	transcription start site region 60394	233 bp upstream
Tssr60395	transcription start site region 60395	157 bp upstream
Tssr60396	transcription start site region 60396	327 bp downstream
Tssr60397	transcription start site region 60397	1339 bp downstream
Zc3hav1	zinc finger CCCH type, antiviral 1	within coordinates