rs38471335 SNP Detail

Summary

• ID
  rs38471335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87821086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATAGA TGAAAATGAC
  TGTTTAGATC TTTCTTTCTT GCTGAGTTAT TAGAATTTCC CTCACATAAT TTTTCAAGTA
  AAACTGATAA GAAAATACAG TGACCATGTA TCTTTTTGTA TAGCTTGTTT CAACACTAAA
  ATAACCCTTT CTGCACCATG AGATTATTGT CTTCAAATTC TAAAACTTTC AGGAGGCCAT
  R
  ACACCGTTTT CTCCCTCTTC ACAGGAAGAC TCTTCAATCA GCTCATCAAG TGAGGTAAAC
  ATTTCATTCT CACTCCCAGA TCCAGTTACC TGGAAGATGT AGGTGCACAT ATGTAGTGCG
  ATATGTAACT ACAACATAAG ATGTCCATGC CTAAGAATCT CTGTGTATGC GATTATATTA
  GTTTTAGTAT GTAATCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51175070	NES13826314	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38471335					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51175070	NES13826314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87821086 () rs orientation: forward

Symbol	Name	Function Class
Csn1s1	casein alpha s1	within coordinates
Tssr1525	transcription start site region 1525	1037 bp downstream
Tssr46870	transcription start site region 46870	within coordinates
Tssr46871	transcription start site region 46871	820 bp upstream
Tssr46872	transcription start site region 46872	963 bp upstream
Tssr46873	transcription start site region 46873	1774 bp upstream
Tssr51605	transcription start site region 51605	1668 bp upstream
Tssr51606	transcription start site region 51606	849 bp downstream
Tssr51607	transcription start site region 51607	992 bp downstream
Tssr51608	transcription start site region 51608	1808 bp downstream