rs38471608 SNP Detail

Summary

• ID
  rs38471608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69467307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGCGCATT CAGGTTATAA ATTTTGCTTG
  TGTGAGAAAA TGAGACAACC TTGAGTATGT GGAGTGATCT CGGCAGAATT CAGAGCAACT
  AATTCACCAG TCCTCTGCTT CTAACGGGCA CAGTGCAATC AGAAGAGGCG CTCTACTCTG
  Y
  CATGAGATGG GAAATACGAC ATTTATACTG TGTGAACTCA GACCAAACAA CCTGTCTAAT
  GGCTTCTTAT TAAAACCgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgttgtatgc
  atttgtgtgt gtgCAGGTAT GAAGACCCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51265572	NES14271299	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C		T	C	C	T		T
ss319781351	CHEV_1_69474722	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38471608					SNP	C	C	T	C	C	C	T	C	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51265572	NES14271299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69467307 () rs orientation: forward

Symbol	Name	Function Class
Gm69966	predicted gene, 69966	1608 bp downstream