rs38471669 SNP Detail

Summary

• ID
  rs38471669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:48938950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAATAA CACAGTTTTG
  GGTCCACAGT CTGATCAATA TCCTGCATCA TCCACATGGT AATTGAAGCA GTGCAGTGGG
  GAAACCCAGC TGGAGGGTCC ATTAGTATCC TCAGGCTTTA TTACTCTACT AACTGGATTC
  CAGAAGGGAG CCAGGCAGAA CAGAAATCCT TGTTGTCCAC ACTTGTTTTT ATTCCGTTTA
  R
  GGCCTTGGAC AGGGCCTATG AAGGGCTCAT GGCCGAGTAA CATCCAGAAC ACAGCTCTGC
  TCCCAGCAGT GCAGTGAGCA TGCTTGTGGT TGGCATAGGA ACAGATCGTG TGGCTCTTGA
  CTTTCCCTCT TCTCTTCTGT TTTGCTGCTT CAAAGAAATC TGGCCCTGAG TGACCTGAAA
  GAGCCTCCAG CAAGGCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52014752	NES15032866	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38471669					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52014752	NES15032866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48938950 () rs orientation: forward

Symbol	Name	Function Class
1700042D02Rik	RIKEN cDNA 1700042D02 gene	within coordinates
Tssr85003	transcription start site region 85003	478 bp upstream
Usp28	ubiquitin specific peptidase 28	Intron