rs38471966 SNP Detail

Summary

• ID
  rs38471966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37463733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG CACCATTCTT TCCCACATTG
  Y
  TCCTAGGTCT TCCGCACCCA CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50673632	NES14003070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T		T	T		T
ss322907350	CHEV_9_37360022	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38471966					SNP	T	T	T	T	T	T	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673632	NES14003070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37463733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	within coordinates
Nrgn	neurogranin	within coordinates
Rr676716	regulatory region 676716	within coordinates
Rr676717	regulatory region 676717	457 bp proximal
Rr676718	regulatory region 676718	1751 bp proximal
Tssr88858	transcription start site region 88858	227 bp downstream
Tssr88859	transcription start site region 88859	288 bp downstream
Tssr88860	transcription start site region 88860	518 bp downstream
Tssr88861	transcription start site region 88861	954 bp downstream