rs38472216 SNP Detail

Summary

• ID
  rs38472216
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTTTTA TGACTACAAA
  AATCAGTAGT ATGTCCTGAA ATAATCATTA AGCTGTTTGA AAGTATGACT GCTTGCCATG
  TAGATACCAT GGCTTGCTGA ATAATCAGAA GAGGTGTGAC TCTTATTCTA AAATTTGTCA
  CAAAATGTCA AAATGAGAGA CTCTGTAGGA ACGAGTCCTT GACAGACAGC TCAAGGGGTT
  W
  TTTTCCTTTG TCTCATTTCT ACATGAAAGT AAATTTGAAA TGATCTTTTT TATTATAAGA
  GTAGAAATAC AGTTGGGTTT GAACTATATG TTTTAATGGC CACGGTTTTG TAAGACATTT
  GGTCCTTTGT TTTCCCAGTT ATTACTCGAT TGTAATTTTA TATCGCCAGC AATGGACTGA
  AACGGTCCGC AACCTCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676698	NES14820427	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	A	T	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38472216					SNP	T	T	A	T	T	T	A	T	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676698	NES14820427	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701682 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1748 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1737 bp upstream
Igkj2	immunoglobulin kappa joining 2	1744 bp downstream
Igkj3	immunoglobulin kappa joining 3	1438 bp downstream
Igkj4	immunoglobulin kappa joining 4	1113 bp downstream
Igkj5	immunoglobulin kappa joining 5	775 bp downstream
Rr158	regulatory region 158	1253 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	437 bp upstream
Rr399685	regulatory region 399685	849 bp upstream
Rr399686	regulatory region 399686	1813 bp upstream
Tssr56952	transcription start site region 56952	1847 bp downstream
Tssr56953	transcription start site region 56953	1151 bp downstream
Tssr56954	transcription start site region 56954	1019 bp downstream
Tssr56955	transcription start site region 56955	798 bp downstream
Tssr56956	transcription start site region 56956	1110 bp upstream
Tssr56957	transcription start site region 56957	1732 bp upstream
Tssr56958	transcription start site region 56958	1779 bp upstream
Tssr56959	transcription start site region 56959	1797 bp upstream
Tssr56960	transcription start site region 56960	1820 bp upstream
Tssr56961	transcription start site region 56961	1834 bp upstream
Tssr56962	transcription start site region 56962	1842 bp upstream
Tssr56963	transcription start site region 56963	1891 bp upstream
Tssr56964	transcription start site region 56964	1906 bp upstream
Tssr56965	transcription start site region 56965	1912 bp upstream
Tssr56966	transcription start site region 56966	1923 bp upstream
Tssr56967	transcription start site region 56967	1938 bp upstream
Tssr56968	transcription start site region 56968	1962 bp upstream
Tssr56969	transcription start site region 56969	1998 bp upstream
Tssr61321	transcription start site region 61321	1784 bp downstream
Tssr61322	transcription start site region 61322	1949 bp downstream
Tssr61323	transcription start site region 61323	1964 bp downstream