rs38473294 SNP Detail

Summary

• ID
  rs38473294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60959676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGTTG CAGGGAGAAC
  CCGCACATTT ACGAACGATG AAGGACACTA GAGGATCCAA AGTAAACGAC CAAGAAACCA
  TCGAACCACC CAAACCTACA AAACGAGAGT CGGAGGGAGG GGGGATAGGA GGAGCCTAGA
  CCGGAAGCCA ATGGAATCAT GGGTACTGTG GTCAGGCGTG AGCTGGAGAG CATTGTTCTA
  R
  GGAAGGCATC GGGAAGGGCT GAAGATGCTG AGGTGTGTGG TCAAAAGCTG TCGTCTTTAG
  ATGGTTCCAT AAAAGTGGAT GTTTGCTGGG GTGTAGCGCA GTGTGAGAGG AATTGTCTCG
  AGTGAAGAAG GCCATGGGTC GGGTCACTCC CCAGCACCAC AGACACCTAT GTTTATGGAG
  TGGAATTAAG CCAGCATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025278	NES15042145	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38473294					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025278	NES15042145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60959676 () rs orientation: forward

Symbol	Name	Function Class
Gm33699	predicted gene, 33699	within coordinates
Gm39348	predicted gene, 39348	within coordinates
Rr401422	regulatory region 401422	1954 bp upstream
Rr680430	regulatory region 680430	279 bp proximal
Rr680431	regulatory region 680431	1594 bp proximal