rs38473749 SNP Detail

Summary

• ID
  rs38473749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43484519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCTGAG CATCCTGGTG
  TCTGTGCCAA GCTAGGTGTC TCTGCTCTGC TAGGTCTGCA AGCCTTACCT GTAGCGAGGA
  AGGCAGCCTG TATCAGCCCC TGGACCCAGA CCAGGAGCAG CCAGCCATGC ATGCTTCTAA
  CCAGAGGCCT ACAGCAAAGT GGATGTGGCC TCTCCTCCAA CTGAAACTGG CTCACTGCAG
  Y
  TGTAAGGTGA AACCAAGCTG GTGAAAAGAG GGTCTCGGAA AAACTGACTT AGGTAAGAGC
  AGTGTCAAAC GTGTAATGTT TTCTTAACAA GTACACAAAG CCACATAGGG TGAGCCACAA
  GAAAGGCCAT GAAGGAAACA CACTGTAAAA ACAAATAAAA CATGTGGTTA GAGATACACG
  GGTCTTGGGC AACTCGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51818971	NES14536935	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38473749					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51818971	NES14536935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43484519 () rs orientation: forward

Symbol	Name	Function Class
Rr516192	regulatory region 516192	within coordinates
Tigit	T cell immunoreceptor with Ig and ITIM domains	10 bp upstream
Tssr138525	transcription start site region 138525	374 bp upstream
Tssr141140	transcription start site region 141140	925 bp upstream
Tssr141141	transcription start site region 141141	30 bp upstream
Tssr141142	transcription start site region 141142	15 bp upstream
Tssr141143	transcription start site region 141143	within coordinates
Tssr141144	transcription start site region 141144	204 bp downstream
Tssr141145	transcription start site region 141145	843 bp downstream