rs38474395 SNP Detail

Summary

• ID
  rs38474395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10982571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTGCTCTG TAGACAAACG ACCAATTTGT TAACAGTATC
  AGTTTTGAGC ACTTGCATGC TTGGTGGCAT GCACCTCCAT CCGACTGTAC ATTGGTATTT
  R
  CAACTGTCAC AAACCCTGAA CCAAATCTGA AGGCATTCCT TCTGTATTAG CTCAGAGAAT
  CCATTCCAAC CAGCCCCTTA CTAATATTGC CTGGTAGATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51577111	NES14605693	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38474395					SNP	G	A	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577111	NES14605693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10982571 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	within coordinates
Cpgi6946	CpG island 6946	339 bp distal
Gm34315	predicted gene, 34315	852 bp upstream
Rr311562	regulatory region 311562	within coordinates
Tssr130700	transcription start site region 130700	720 bp downstream
Tssr130701	transcription start site region 130701	680 bp downstream