rs38474525 SNP Detail

Summary

• ID
  rs38474525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15894482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTAAGT TATTATTTTT
  GCATTTTCTT GTCCATTTGT GCATCAGACC CATTACCCAC GGCCCTTCTC ACCCCTTGCT
  CATCAGCATC ACTTGATGTC CCTTCTCTGT GGTTTCTGTA AAAAACTGCC ATAAAACTTT
  GAAATTCTGC CTGAACAGTC CTCCCGTGGG AAGTTGGGGT GCAGGAGGAA AGGGATGGTA
  R
  CAGCTCCGAC ATCTAGACCA CAGGAAACAG ACCCGGCAGC CTTTGCATTA GAGTTGGCCA
  GACAGCAGGA CACCAGCATA CGCTAACCAC ATTCAATGTT ACCAGAGCCT CCACCAGCCA
  CAACCATAAC TAAAAGCCAT AGGCTTCTGG TACCACGCCT TACCCATTAG CCAAGAGCAT
  CTACTAGTTT CACCCCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51880846	NES14893768	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38474525					SNP	G	G	G	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880846	NES14893768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15894482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	1247 bp distal
Rr155078	regulatory region 155078	719 bp proximal
Rr160786	regulatory region 160786	1519 bp proximal
Rr164335	regulatory region 164335	100 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	363 bp downstream
Tssr64588	transcription start site region 64588	347 bp downstream