rs38477934 SNP Detail

Summary

• ID
  rs38477934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTGGGC GCACACTACA
  ACTCCCAGAC GTCCTCGGGT CTAAGGGGGC GGAGTCTGCT CCGCTCTAGA AAATAGGATT
  CACCAATGGG CGCCCAGAGC GCTGGGGGGG GGCGGGTCCA TGGGCGGGTC CGCGGGGGAG
  GAGGCAGTCG AGCGGCGCCG GTAGTCAGTC GCGCCGAGAG CGCTGGGACA GGACGGCTGT
  R
  CGTGTAGAGG GTCTCTGCAT AGCGACGCGC GCTCTCGCTG GGCCATGGGT AAGCGGCTGG
  CGGGCGGCGC CGGGGTCAGA GGGCTGGGGT CCCAGAGCGA TCGTGGCTCT CAGGGTAACC
  CGAATGTCTG CGTGCTCTCT TCTCGTGGAA AGTCGGGGCG GCCAGGGGCT TCCCAGGCGT
  TTATCTCGAA ACTCTCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51238020	NES14282243	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38477934					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238020	NES14282243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346869 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	within coordinates
Gm70585	predicted gene, 70585	164 bp upstream
Rr366864	regulatory region 366864	122 bp upstream
Rr395991	regulatory region 395991	within coordinates
Rr409283	regulatory region 409283	175 bp distal
Rr409284	regulatory region 409284	9 bp distal
Rr409285	regulatory region 409285	within coordinates
Tssr6253	transcription start site region 6253	53 bp downstream
Tssr6254	transcription start site region 6254	25 bp downstream
Tssr6255	transcription start site region 6255	9 bp downstream
Tssr6256	transcription start site region 6256	271 bp upstream
Tssr6257	transcription start site region 6257	349 bp upstream
Tssr6258	transcription start site region 6258	479 bp upstream
Tssr11252	transcription start site region 11252	1831 bp downstream