rs38480042 SNP Detail

Summary

• ID
  rs38480042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGCTGC CCACTCAGTT
  GGAGTGCTTT CCAGGCCCAA GGCCTGGAGG GTGGAGGCCC TTAGCAGTTA GACAAGCATC
  AGAATTTCCA GCCTGGAGCA GCTGCAAGGG CTGGGAGGGG TTGGGACATG GGCTGGGTGG
  CAGGTGGGTG GAGAGCACTG GATGCCCTCA GTCAGCTGTG CCCAGGAGCC AGGACTTAGG
  Y
  CCCGGAGTTG CTGGTGAGTG CCCAGGTTGG TCAAGGGAGT TAGGAGGCTA GCGGGGGCAC
  TGGGTGGCCA TGCTCCCCGA TTTCCCACAG TTTCAGGGAG GGCCTTGTTG GGATAGAGCC
  TCCCCTGTGG CCTGGCTTTG GTGTTAGAAC CCGAGGGAGA TACAAAATCA GCTGGGGAAG
  TGGAAGCTCT TCTCTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866200	NES14170283	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	C		T
ss323325383	CHEV_10_59863538	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38480042					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866200	NES14170283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236569 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr223077	regulatory region 223077	1939 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	1018 bp downstream
Tssr93634	transcription start site region 93634	985 bp downstream
Tssr93635	transcription start site region 93635	914 bp downstream
Tssr93636	transcription start site region 93636	26 bp downstream