rs38480158 SNP Detail

Summary

• ID
  rs38480158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80365301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTACCAC CTGGCATGTC
  TTGGCACCAT TCCCAAGAAT GCCTACACCT TTAAACCTAA GGTAATTTAC CACTTTTCTT
  TTTCCAACAC AACGTCAAGA CCGAAGTTCT AATAAATTTA AATGATACGA GATGCTATTG
  TATGCTAGTA AAATAAAATT CTGACGTCCC AAGAGGTTAA GTTCCGGATT CGCAAACCCA
  W
  TTGGACTGCT CAGGTCGGAT TCCCCGTAGC GTTATCACCG AATTAAAAAA AAAAAAAAAA
  AAAAAAAAAA GAAGTAATTT CTTCTAACAG GGACAGCTCT TTGTGTGGCA GAGCGCAGCT
  GCTGTGACAG AATGAGCAGG CATGCCCTTG GCAAAGCCAG ATCTTGTCAG AGTGTGAGCT
  GTCCCAATTT CAATCAACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51968118	NES14983071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38480158					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51968118	NES14983071	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80365301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	75 bp proximal
Gm51579	predicted gene, 51579	within coordinates
Otud4	OTU domain containing 4	1004 bp upstream
Rr400987	regulatory region 400987	510 bp upstream
Rr665883	regulatory region 665883	456 bp proximal
Tssr78137	transcription start site region 78137	679 bp upstream
Tssr78138	transcription start site region 78138	727 bp upstream
Tssr78139	transcription start site region 78139	754 bp upstream
Tssr78140	transcription start site region 78140	820 bp upstream
Tssr78141	transcription start site region 78141	970 bp upstream
Tssr78142	transcription start site region 78142	1091 bp upstream
Tssr78143	transcription start site region 78143	1504 bp upstream
Tssr78144	transcription start site region 78144	1523 bp upstream
Tssr78145	transcription start site region 78145	1551 bp upstream
Tssr81884	transcription start site region 81884	39 bp downstream