rs38482273 SNP Detail

Summary

• ID
  rs38482273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115454726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTCTTT AAAGAGACAT
  CTGTGCCCCT CCCCCACCCC CACCCCGCAC CTTTGGACTG TGGGAAAAAA ATGGAGCCCA
  AGAAAACTAG AATTTCCTTA AGAGTCTTAT GCTAGGAAAA GGGAAAGGCT TGTCCTGGTG
  TCAGCCTGAG ATGACAAGCT TGTCTCCTGG AAAGAGGTTC TGGAAGGTTC AGGCAACCAT
  Y
  TTATCACACT CCACCTTGTG GGAGAGACTA GAGCAGAGAC AATAGTGGGT CAGTGAGGGA
  GCAGACACAC CCTGACCAGA GATCTGGCTG TAATTATGCA TAACACACAC ACACACACAC
  ACACACACAC ACACACACAC GCTACCCTCC CCCACCCCCC TGTTCCTCGG AAGGTGGACT
  TGGTTAATCC CAGGACCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50798476	NES14206638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38482273					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50798476	NES14206638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115454726 () rs orientation: forward

Symbol	Name	Function Class
Gm68175	predicted gene, 68175	within coordinates
Gm68176	predicted gene, 68176	550 bp downstream
n-R5s92	nuclear encoded rRNA 5S 92	942 bp downstream
Rr370673	regulatory region 370673	1360 bp downstream
Rr687898	regulatory region 687898	1223 bp distal