rs38482631 SNP Detail

Summary

• ID
  rs38482631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:74604618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCTTTGA TGTACAAGGG ACACCTATGG CATCTTGAAT
  TGGTCTGTGG GAGGATTTGT ATGTTATATA GAATGTAAAA CACAAGTTGT AAGACAGCTT
  Y
  ACAAGGACTT CCAGAAAAAC TTCAGGGGCC TCCCATGATG AGGGGAGAGG GGGAAGGGTG
  GGGGCTAATG GCCTGGACAG AAAGTCTCTT GGCAGAAATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51714867	NES14563499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38482631					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51714867	NES14563499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74604618 () rs orientation: forward

Symbol	Name	Function Class
Lypd2	Ly6/Plaur domain containing 2	Intron
Rr504340	regulatory region 504340	1974 bp distal
Tssr134735	transcription start site region 134735	1523 bp downstream
Tssr134736	transcription start site region 134736	1545 bp downstream
Tssr134737	transcription start site region 134737	1589 bp downstream
Tssr134738	transcription start site region 134738	1991 bp downstream