rs38483060 SNP Detail

Summary

• ID
  rs38483060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33577083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTGAGT CATGAAAGAA
  GACAGTTAAC TCTTCTTTCT AGTTTTACCT CTTTTGTGTG TGTGGTTAAG TGCATAAAAC
  AATATTTGAT GGTGAAAGTG GAATCCAGTG TGAAGCTCCA CAGCTTTCAT TGAGATGGAT
  AAACTTTGGG TCTGGTTAAT TTCACTGTAT GATGTTTTTT ATAAGTTTTT TTGTAATAAA
  W
  CTTTTCCTTT TGTTATTGCT GCTGTTGTTA TTTTGAGACA GGTTTTCTCT GTGTAGCCCT
  GGCTGTCCTT GAACTCACTG TAGACCAGGC TGGCCCCAAA CTCAGCGATC TGCTTTCCTG
  ACTCCTAAGT GCTCAGAATC AAGGCCTGCA CCACCACCCA AATGGCTTTG TAATGAAATA
  TTAATAATAA AAAGATTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51697961	NES14750249	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38483060					SNP	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51697961	NES14750249	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33577083 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	1881 bp downstream
Uvssa	UV stimulated scaffold protein A	within coordinates