rs38483985 SNP Detail

Summary

• ID
  rs38483985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5650797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTGCA GTGAGCTGGT
  GGGGCATATG CAGTGAGCTG GTAGGACATG TGCAGTGTGA GCTGGTAGGA CATGTGCAGT
  GAGCTGGTGG GGCATGTGCA GTGAGCTGGT GGGGCATGTG CAGTGAGCTG GTGGGGCATG
  TGCAGTGTGA GCTGGTGGGG CATGTGCAGT GTGAGCTGGT GGGAAATACA GCGCAGCTGG
  R
  AGGATTACTT GGAGACCAAC AGTGAAATAT TATTTGCTGG AATCTCCAAG TCTTAAGGCA
  TGGAGACAGG CCAGGGGCAG TGTGTTTCCC TTGAGGTTTG AGCAGCCAGG CCCTGCCCTC
  AAGACTTCTC TAATCATTAT GTCCAGCCCC ACTGGAAATT AACCAGGCCC TGCCTTAAGG
  AAAAAACAAA ACAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ
ss50578392	NES13651155	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ
rs38483985					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578392	NES13651155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5650797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	924 bp proximal
Rnaseh2c	ribonuclease H2, subunit C	1104 bp upstream
Rr363585	regulatory region 363585	803 bp proximal
Rr370434	regulatory region 370434	1007 bp upstream
Tssr154457	transcription start site region 154457	1072 bp upstream
Tssr154458	transcription start site region 154458	1085 bp upstream