rs38486138 SNP Detail

Summary

• ID
  rs38486138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:23773180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAACTTA TTGGCTTGTG
  CTTGGCACAG TGTATTTGCT AAACTAAATT TTGTATAATA AGGTTGTGAC ACATGCCTGA
  ACCATGTGCT CTACTACTGA GCTATATCTT AGATTCTTAC TGGGGGATTC TAGGCAGGAG
  CTCTACCATT GAGCCACACA CCCCAGACCT TCGCTGGGGG ATTCTAGGCA GGGACTCTAC
  Y
  ATGGTGTTGA ACTCTATCTG TACACCCTGG GAATTCAGGG TATTTTGGGT CATTGCCCAA
  GAGCAGACAA GTAAGGGGAT GGGGGTAAGG AACACAACAG CGTCTATGGA AATTGGCCAG
  AACCCGCCCC ATGAGATTAT GAAGGATGTG TGTTTCAGGA CGCGCAGGAG ATCAGCCAGT
  GATACAACGA GCTCTAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51472337	NES13983600	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38486138					SNP	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51472337	NES13983600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:23773180 () rs orientation: forward

Symbol	Name	Function Class
Gm36694	predicted gene, 36694	within coordinates
Gm44943	predicted gene 44943	160 bp upstream