rs38488609 SNP Detail

Summary

• ID
  rs38488609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36394550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGTGG TGGGCTTTGA
  ATTATAATTG GGTATTGTGT GCATGCAGTC ATCTTTTTTT GTGTTTACAT GTTTTTGAGA
  TTCATCGACT ACAAAACTAA AACACAGCAA ACATTGAGAC CAGTCAGTCA AGGACATTGG
  TTCAGCATAT TCTGTCATGT GGCTCCTGCT CTCATGAGAC AGAAGCTGCC AATTCCTTTT
  W
  AAAGGCAGGA TACATTAAAG AAAAGAGTAT AAATGGCGCA CAATAGAAAT CTGAAAGGCA
  TCAAATCTGG AATTGAGAGC TTCTCCATTT TTCATGTGAT TTAGCACATA AGTTCTTACC
  TAATTGTAAA AGACTTGTGT AGTTTGTTTC ATAGAAGAGA AACCTTGACA TTCATCAGAC
  TCATTTTATG AAGTTATACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51094125	NES14363062	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38488609					SNP	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094125	NES14363062	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36394550 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	within coordinates
Rr279014	regulatory region 279014	1011 bp distal
Rr286029	regulatory region 286029	383 bp proximal