rs38490218 SNP Detail

Summary

• ID
  rs38490218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58510539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTACATA TTCTCAGCTC
  TGCTTCCTCT TGCATCTTAG GTCCTTACTA CATCTCAGAG GGATAACTTG TCTTGTATGT
  ATGTCTCCTC ACAAACCTCA GCTTCCCTTT CTTTACTCCG TTTATGGCTA TACTCGATGG
  TCATCAAGTT CATTTCATTT GTTTTCTAAA CATTTTTTGT GTTTACTGTA TTCACACCAC
  R
  ACAGCCACTC TTAATTGCTT GAGATTCATT TTTTTTTCCC ACTTAGATTA TTGAAGAAGA
  TTCAAGGTTT TTTCTGACAT TGTTCTTCAT TTCAGGACTA CTTTGTGTTG CCACCATTCA
  CATCAGAATC TTTGTTCATA GGAAAGAAGC CCAGGCTGCC CTTCATAGTC CACAGCATGC
  TTTTCATTTT TACTTTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52022170	NES15038132	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38490218					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52022170	NES15038132	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58510539 () rs orientation: forward

Symbol	Name	Function Class
Nptn	neuroplastin	within coordinates
Tssr85401	transcription start site region 85401	473 bp upstream