rs38493244 SNP Detail

Summary

• ID
  rs38493244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41020099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCCCTT CTCCCTAACC
  GTGGCACTCA AACCAATGTT CCGTCTGATG TGATGTTGAG GTGAGAAGAA GAATGTCAGA
  ATCCTTTGTT AAACTTCACT GTAGTATGAG TGTGAGTCTG GTTAAATAGT TAGATCCATT
  GGCCTGTACA GCCAGACCAA AAGAAGGTTG TTTCTCCCCT GTATATACCA GATCAGTCTA
  Y
  AGAAACAAGC AGAACAAAGA CAGGAAGGCA GTCTATGAAA ATGCTATAAG CAGTTATCTG
  GTGTGGGAAG GTATATGATC AGATTTTCTG TGTCTTCCAA TTTTTTTTTT ACAACAGATA
  TACGTTTGTT CGTGTTTGTT TGTTTGTTTG TGAAACAGAG TCTCTCTAGA TATCCTCGCT
  GTCCTGGAAC TCACAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50828456	NES13536839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38493244					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828456	NES13536839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41020099 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	1499 bp distal
Rr365009	regulatory region 365009	899 bp distal
Rr370497	regulatory region 370497	376 bp downstream
Tssr5510	transcription start site region 5510	444 bp upstream
Tssr159242	transcription start site region 159242	524 bp upstream
Tssr159243	transcription start site region 159243	497 bp upstream
Tssr159244	transcription start site region 159244	480 bp upstream
Tssr159245	transcription start site region 159245	467 bp upstream
Tssr159246	transcription start site region 159246	384 bp downstream
Tssr159247	transcription start site region 159247	398 bp downstream