rs38493354 SNP Detail

Summary

• ID
  rs38493354
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128070799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTACAC AGAGTGACAG
  GAAGGGGTGA GGGGATAGTG AGGTGGTTTA GGAAACTCAG AGGAAACAGC TGCTGGCTCT
  GGAAGCACAT GTGGCTCTGC CTGGGCCTCT CAGGACAATC CTACAGGGGG ACAGGGGCAT
  TCAGGCTGGA GCTAGTAATT ACCTAGTGGA TCTATCACTG CCCTGTGCCA GCATCCAGGG
  W
  CCTCATGAGA ACCTGTGTGG AAGGAGTAAC CGCCAAACGG GACAAGGCTA AGAGCCTACA
  GCCAGTGGGA TGAAGAAGAC CCTGAAGAGT GGCTGAGGGG GCAGTAGAGG ACCAGCCCCC
  AGTCAGAAGA ACCCAACAAA GGGGCCAGAA GGGTCAAAGA AGCATTCCCA GTGGCCAAAA
  GTGGGATACC CAACTTGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863762	NES14893041	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38493354					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863762	NES14893041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128070799 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	1081 bp downstream
Rr639177	regulatory region 639177	1676 bp distal
Rr639180	regulatory region 639180	749 bp distal
Rr639181	regulatory region 639181	1346 bp proximal
Rr639182	regulatory region 639182	1554 bp proximal
Tspan9	tetraspanin 9	within coordinates