rs38493857 SNP Detail

Summary

• ID
  rs38493857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTTTCT GAAAAACAGG
  TTTGGGGAAG GCCTGGACTT TGAAACAGGT CCAACTTCTG TGGCTGTCAT TCCTGGAATA
  TGAATACACT GAGTGCTTAA AACTGAAAAT CAAAGCTTCT CCTAATATAT TTGTGCTAAA
  ATGCAATGCC CTCAATTGTT AACAGGGCAT GATGCATTAA TTTTATAAAT CAGTGGTTGT
  Y
  TGTAGAGCTG GAAGCCTTGT GACCTTGTGT TAGCTACTTT TTACATGATT GGTGAAGGAG
  GAGAAAAATG GCCTCCCAAT GCAGGATACT CTAGCACCCT ACCTCTTAGA CAAGTAGATT
  TGGGCTTGGC TTAAATTTTT TTCTCTGCAC TAATACCGAG CCGTAGAACA CTTGATAAAG
  CCAAGTCCCA AGGTTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605216	NES13645665	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38493857					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605216	NES13645665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Best1	bestrophin 1			1308 bp downstream
Cpgi10595	CpG island 10595			481 bp distal
Fth1	ferritin heavy polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm36913	predicted gene, 36913			1346 bp upstream
Rr543964	regulatory region 543964			1359 bp distal
Rr543965	regulatory region 543965			1133 bp distal
Rr543966	regulatory region 543966			within coordinates
Rr543967	regulatory region 543967			465 bp proximal
Tssr155003	transcription start site region 155003			1155 bp downstream
Tssr155004	transcription start site region 155004			1014 bp downstream
Tssr155005	transcription start site region 155005			748 bp downstream
Tssr155006	transcription start site region 155006			312 bp upstream
Tssr155007	transcription start site region 155007			381 bp upstream
Tssr155008	transcription start site region 155008			691 bp upstream
Tssr155009	transcription start site region 155009			1037 bp upstream
Tssr155010	transcription start site region 155010			1227 bp upstream
Tssr158131	transcription start site region 158131			1431 bp upstream
Tssr158132	transcription start site region 158132			1417 bp upstream
Tssr158133	transcription start site region 158133			1360 bp upstream
Tssr158134	transcription start site region 158134			1335 bp upstream
Tssr158135	transcription start site region 158135			1299 bp upstream
Tssr158136	transcription start site region 158136			926 bp upstream
Tssr158137	transcription start site region 158137			353 bp downstream
Tssr158138	transcription start site region 158138			399 bp downstream
Tssr158139	transcription start site region 158139			719 bp downstream
Tssr158140	transcription start site region 158140			940 bp downstream
Tssr158141	transcription start site region 158141			991 bp downstream
Tssr158142	transcription start site region 158142			1007 bp downstream
Tssr158143	transcription start site region 158143			1066 bp downstream
Tssr158144	transcription start site region 158144			1223 bp downstream