rs38495639 SNP Detail

Summary

• ID
  rs38495639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36266902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCATCT TAAACAGAAA
  GTATGTGGCA GAGATCAAAA GTAAATAATA TGGAAGATAT TTCAACCTTT TCCTTCTCTC
  TTCTCTAGCT CTTGCATTTT AGCAGGAAGC AATCTTACTT TCCATTCCTC CTTCACCCTC
  CCCCACCAAC CCCCACACCA TCTATGCTAG TTTAAGTATT GAACCTTTTG GATTTATGCG
  W
  TTTGGATGGC TGGTCCTTAA ATTACCATAA ATTAAGTTTC TGAGATATGA AATCAGTTTC
  CTGTGTCTGA GTGTTCTGAA AGCGTCGTGT GATGTATGGG CACATTCCTG TAGCAGCGAG
  GAAGCAAACT CGCTTACACT TTCGCTTTCA ATAGGTTAAT ACTAGTTAAT CCACCTTTCC
  CTCTAGGCTA CTTACGAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978597	NES14418349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38495639					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978597	NES14418349	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36266902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			1398 bp upstream
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Rr465166	regulatory region 465166			1501 bp distal
Rr465167	regulatory region 465167			1629 bp distal
Tssr116139	transcription start site region 116139			1269 bp downstream
Tssr116140	transcription start site region 116140			1285 bp downstream