rs38495786 SNP Detail

Summary

• ID
  rs38495786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112857525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACCCCTC CACCGCTCTG CACCATTCTG CCTGAATCTC
  TTGCCTCCTC CCAAACTCGA GGCATCAATT CATCTGTCTG CAGAGGGATG GAACAAGGTG
  R
  TGCCAACAGC CACGGTGAGG AGATGCCTGG CAATGCACCT CCTCTCTCTC AGTCAAGGCC
  TTTAATATGA GTTTCCAGAG TTTGAAACGA TTTTGTTTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss51845251	NES14771305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs38495786					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51845251	NES14771305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112857525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636401	regulatory region 636401			822 bp distal
Rr636402	regulatory region 636402			within coordinates
Srgap3	SLIT-ROBO Rho GTPase activating protein 3			Intron
				Noncoding-Transcript-Variant