rs38497014 SNP Detail

Summary

• ID
  rs38497014
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66590772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCTGCC TGTATTGAAC
  TTGGAGGGTC TGCACCATGC AGAGCAATAT AAAATGCAAA ATAAAGCAAC ACATTTTTTT
  GAGAACAGTG AGTCCTAGCA CTTGTTCCCA GTGGGCATGC CTGGGTTCAC TTCAGAAGGG
  CGTTGCTGTC TGCCTAGGAG AATTTGGGCG ATTTAATCAC TATCAAATTA TTTCTGCATT
  K
  TAAAAGCGAC CAAACTTCCC AGAGCCAGGT TGAGAACGGA ACGTCAAAAA TGCAAATTCA
  AGTCTTTATC ACGAAGGCCT CCAAGCTCCA GACAGTGCTC AAGGAAGCTC CAATTCCCAG
  AGATATCATA TTCCTTCCTC CACAAAGGAT CTGGACCCAT CGTAGATGAA GGTGGTCCCT
  TCTTGGGGCT GTATCAACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450332	NES13440892	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38497014					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450332	NES13440892	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66590772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	493 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	903 bp upstream
Rr405709	regulatory region 405709	718 bp upstream
Rr539737	regulatory region 539737	342 bp proximal
Rr539738	regulatory region 539738	690 bp proximal
Rr539739	regulatory region 539739	744 bp proximal
Rr539740	regulatory region 539740	903 bp proximal
Tssr151705	transcription start site region 151705	886 bp upstream