rs38498613 SNP Detail

Summary

• ID
  rs38498613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33890734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCCAGC TCCTGGGATT
  TTATGCTATT GATTGTGCAG TCTCAGGACA TGTTCTACAT TCGGAATCAC CGACTTGTGT
  GTAGCTAATT CCAGGCGGGA TGTTCTCAGC ACGTCTGAGT AAGATCTTTG AAATCCTTAA
  CCTCTGTCCT GTCCCTTTTA TTGTTTGTGC TTCTTACCAG TACTGTTCTT ACAATGCCAA
  R
  CGTGTCTCAT CAACTCGATA AGCAATCGCA CAATTGTAAT ATTCAATTCC ATGCCTCCCT
  CAGTGTTAAT TTAAAAATGG GAAAGGATCA TTTCAGCCTC AAGTTTAATG CTCTAGATAC
  AGAATTATTT TTCCTTTGCT CTGAGAATAC TAAACATACT TTTTATAATT TTTTTTATTT
  CTTGTTATAA CCCAGTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51593355	NES14854170	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs38498613					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593355	NES14854170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33890734 () rs orientation: forward

Symbol	Name	Function Class
Exoc4	exocyst complex component 4	Intron
Rr628223	regulatory region 628223	420 bp distal
Rr628224	regulatory region 628224	within coordinates