rs38500689 SNP Detail

Summary

• ID
  rs38500689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11174554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTCCA CCCTCCTCCA
  AATATAAATG GCTAAAGAAA TTAATGAAGA GACTCTTTAG GAAATGATTA AAATGACTGC
  TTTGACCCAC CCGCTGGGGA CATTTTACTA TGCAGGCTCT CTGCACCGTA TTGGTTTTGG
  ATTTGATATG AGGCAGTAGT TCAACGTTTG TGAAGAGAAA CATAAAGATG CATAGATAGC
  W
  ATGAAAAGAT AAAGAATACT CTACTACTGG AGAGCAAATG GGGAGACAGA AAGGAAAACC
  TGTTTTCTCT AGGGAGCACA GGCCACCTGC CGAGCACCGA AGACTTCCTG AGGGCTTAAA
  GACCCTTGGA CAGTAGATGC TCCTTTAACC AGAGCATGCT GTGAGCTTTC ATTTATTCCT
  GGAAGACTTA AAATTCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50597158	NES13640016	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38500689					SNP	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597158	NES13640016	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11174554 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	within coordinates
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	453 bp upstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	498 bp upstream
Tssr158300	transcription start site region 158300	448 bp upstream