rs38501653 SNP Detail

Summary

• ID
  rs38501653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36392235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATCCCAG TACTTAGGAG
  GAAGAGGCAT AGGAGTTCAG GTTTGAGGTT AGTCTAGGCT ACATAGTGAG GCCCTGTCTC
  AAGAAGAGAA TGCAGAGAGA GAAATATCGA TCATAACAGA AATGAGTAAA GGACAACTGT
  GTCTTACTGA GCACTGACTG AGTAAAAGTG TGAGTGACAG TAACCTCTGC AACCCTTTCC
  K
  CGGAGTAATT AGCAGCAAGC CTGCTGAAGC TCTGGTTCAG AGAAGGCCGG AAAGAAACAC
  TGGGTAGCTT ACTCTGTGTT GAAGCAAACT TGGGGATTTC ACCTATGCCT TCAGAATGAA
  TGGAGGAAGA AAAGAATAAT ACAGAAAAAG GAGTAATGTA TAAAAATATT TAAGTTCAAA
  GACATCAGGA TGAAAAGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51094141	NES14363067	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38501653					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094141	NES14363067	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36392235 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	within coordinates
Rr279014	regulatory region 279014	1135 bp proximal
Rr283246	regulatory region 283246	1036 bp distal