rs38502266 SNP Detail

Summary

• ID
  rs38502266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103978492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATAAGTT AGCTTGGACT
  TTTCCTCCCC AGGAGACTCT CAAGCAAAGA TTTGACTCCA TCCTGTGGAG AAAATGTATT
  TCTGAGCTCT AAGTCGTCTG AAGTCTGACA GCTTGAGTTC TGGCTGTGAC TGAAGCTTCG
  CTAGCATGCC TGGGACACTC TAACTGCTCA CTAAATATCT GTCAGGCTCT AAAGGTGTTG
  Y
  CACCGCATCT AAAGCTGTTA CTGCAGAATG GGTGGACGAT ATGTTTCCTG TGTCACACTC
  AGGAATCACA CGCTGGCTAT TAACAGCGCA GTGCACAAGA AAAACTTGCA CAGAATTCAC
  AAATCTAGTA TGAATATTAT AATGACTTTC CATGTTTTTA TTACTGTTTT TTGTTTTGTT
  ATTTGTTATT TTTTTAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50790563	NES14206543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38502266					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50790563	NES14206543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103978492 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Ackr4	atypical chemokine receptor 4	within coordinates
Gm47000	predicted gene, 47000	within coordinates
Tssr2998	transcription start site region 2998	1285 bp downstream
Tssr91231	transcription start site region 91231	1023 bp downstream
Tssr91232	transcription start site region 91232	1049 bp downstream
Tssr91233	transcription start site region 91233	1135 bp downstream
Tssr91234	transcription start site region 91234	1257 bp downstream
Tssr91235	transcription start site region 91235	1708 bp downstream