rs38504003 SNP Detail

Summary

• ID
  rs38504003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84564397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACCAC CACTCGGCTG
  GATTCTAGCC TTAGAGTCAG TGTAATGTTC TGGGGCTCGT GGTGGCCCGG AAATACAAGA
  TCACAGGTAC TCAGTAGGAC AAGCCAGAGT CTGTGAGAAT TCTTACAAAG TTTTGTCCAC
  ACCTGTCACG CTGTCTCTCC CACTCAGTTC TGTGATGAAA GCAACTCTTA AACGGCTTGG
  Y
  CCACGGGGAA GACAGGGCCA GTGGAAAAGC TGAGGCTCCT CAAAGGTACT CATAAGTAAC
  AGGCATTTGA AAAGGGAGCT CTGATCCCTG AAAGGGGGAA CCAGTTTTCA AAGAAAGAAG
  ACGTAGTGTG AGATACATAA GCCCATGACC TGGCCACTCA GGAGAGTTGG AGCTGAGCTT
  TGGGTGTGGA AGCATGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51563549	NES14676711	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs38504003					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51563549	NES14676711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84564397 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	997 bp distal
Rr68542	regulatory region 68542	1004 bp proximal
Rr68543	regulatory region 68543	1804 bp proximal
Rr76452	regulatory region 76452	1895 bp proximal