rs38504473 SNP Detail

Summary

• ID
  rs38504473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTTTT CTCCCAACCA
  TAATAAAGCT GCAAGCCCTA ACTTTGTCTT TCACCCCAGT AAAAGCTTTC CTGTGCTGAT
  GTTGTCACGT TTTATAACAC CAGGTGGGCT CCTTAGAGCT GTTGTTGTTT AAAATAACTT
  CTCCAGTACA TTTAGGGCCA TCTTCTGTCC ATTATAATTA CAACATGTCT CAAACAGCCT
  S
  TGCAAGGATG CAGAGACTTA AAGGAATACC ACAACCTTTA GGAAATCAGG GATCATTTCA
  GCTGATTTAG TAAATTCAAC AGGGTGGCAT AGAGTGCTAT CAGTAACACG GACTTTAGAC
  CATAGTAAGG GAAGCCTCTG CTTTGGGTTC TACTGTCACT GTTTGCAAAA CTCCTTAGAC
  TCTACAGGGC TGAGTTCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288117	NES13774253	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38504473					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288117	NES13774253	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355099 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	889 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1010 bp downstream
Rr135132	regulatory region 135132	902 bp proximal
Rr146156	regulatory region 146156	1098 bp distal
Tssr55644	transcription start site region 55644	1426 bp downstream