rs38504892 SNP Detail

Summary

• ID
  rs38504892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6168974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTAGGTC GCTGAGCCCA
  AATGCAACGG CTCGTTTTAG TCTCCATTCT CCTGTGCGCG AACTTTAGCT GCTATCCGGA
  CACTTTTGCG ACTCCGCAGA GAGCATCCAT CAAAGCTTTG CGCAATGCCA ACCTCAGGAG
  AGATGGTAAG CGATTCATTT GATTTGTGTT CAGCATTGAA AAGGTCACAT TTGCTATTGT
  Y
  AAGGTTCTTT GGGTCATTCA CCAGACCCCA CCTCCTCCGA TTTTGAATTT TTCAAATGAA
  CTCAGAAGGC ATTCTCTGGA AAGGATTCTC CTGCCTGCTC CTCACCCTTC CCCACCCCCC
  CCACCCCCCG CTAAAATTGC CCCTCATTCT ATAACTACTA GAGAGTGTTT TGAAGTGTCC
  TGGAGGCCAC TGGGGGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640639	NES14035630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38504892					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640639	NES14035630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6168974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	61 bp distal
Pdgfd	platelet-derived growth factor, D polypeptide	within coordinates
Tssr2757	transcription start site region 2757	280 bp downstream
Tssr83664	transcription start site region 83664	514 bp downstream
Tssr83665	transcription start site region 83665	486 bp downstream
Tssr83666	transcription start site region 83666	407 bp downstream
Tssr83667	transcription start site region 83667	379 bp downstream
Tssr83668	transcription start site region 83668	357 bp downstream
Tssr83669	transcription start site region 83669	303 bp downstream