rs38505390 SNP Detail

Summary

• ID
  rs38505390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51729071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAGA AGCGTGAGGC
  GCCGGAAGCG GAACTACGAG GCTCCGTGAC GCTATGTTAA GGCTTTGGGG GTGGGGGGGG
  CGGTGTCTGG AAGCAGGCTG GGCAGGGCCC CGCCTCCTCG GTGGTGTTTC TCCCTCCCCC
  AACCCTCCCT GAGATTGTGG GAATCCTCTG CGCACGCGCG GAGTTTGGCC CGTACTGCTC
  R
  ACCCACAGTA ATTGATTAGG GTCACTCTGA CTACAGAGAA AGAGCTTAGA AGCAAGAGCC
  ATTATTCTAC ACCCACTCAG AATATACAGA AAATGTCTAA AACATGGTTA ACTTTGATCA
  GTCTCTAAAA TGAAAGATTT ACCTGGGTAA AATACTCAGA AGTTCTTTTC TGTAGTGTTG
  TAGTGTGGAA GTTGATGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51665635	NES14579647	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G		G	A	A	G		G
ss324965546	CHEV_15_51697221	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38505390					SNP	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665635	NES14579647	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51729071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	within coordinates
Eif3h	eukaryotic translation initiation factor 3, subunit H	170 bp upstream
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	within coordinates
Tssr134286	transcription start site region 134286	201 bp upstream
Tssr134287	transcription start site region 134287	158 bp upstream