rs38505797 SNP Detail

Summary

• ID
  rs38505797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42110624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATTTAA ATCAATGCAA
  ATGTATGAAT AACAAATCCA GTTCTGACCT CTCTGTCCAG TTTCCTTTGG GGGAAGAAAG
  ACAAGATAAA TGCAGTTTTA AGGACAAAGA CACATTTCTG TGGAGTTATG GGGACTTGAC
  TCTTGAAAAC CAAGTGTTTT CTTAAGACAT TTCAAAAACT GACATGAGTC TGCATTGATA
  R
  AACACATACT TGCTTTTGGT ATGAATATTT ACTATAGTGT TTGCCCTGGC TACTTCCTTA
  CAGTCAGAAT TCTGGGATTA GGTATAGAGC AGTGGGTTGC AACCCTTTTG GGGGGGGGGG
  GGCGTTGAAT AACCATTTCA CAGGAGTCTC CTAAGACCAT CGGGAAACAG ATATTTACAT
  TATGATTTAT AACAGTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50819845	NES13535655	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38505797					SNP	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819845	NES13535655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42110624 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	1090 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	98 bp downstream
Rr547821	regulatory region 547821	1402 bp distal
Rr547822	regulatory region 547822	341 bp proximal
Tssr156483	transcription start site region 156483	1918 bp downstream