rs38506283 SNP Detail

Summary

• ID
  rs38506283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15337939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACCAG GCCAGGATTC
  TACAGGAAAT ACATTTCTCT CCATTATGGA ACTTGCTGCT TTAATTAGCC ACTGTGTCAA
  AGCTAGAAGT AAGTAGGAGT TATTGTCCAT TGTTCTGCTT CCCTGTTCGT CACTAAATTT
  ACATTTACCA ACTCCTAATC AAAGGTGATT TCAACATCTG CTTTTCCTAC TATTAGTTTC
  R
  TAAGTGTAGT ATGAACATCT CGCTTTTAGG TAAGAGCTAT TGGCTTGGTT CCTGGTTCTC
  ACAATGTGCC CCTCATACTA AGAATTATTG GCATCACTGG GAAGTGTCTT TACTCTATAA
  CCGGTGTTAC AGTTACGAGA TCAGAATATG AAGCATAGTA AGAATTCTTG GAAAATCATG
  GGTACACTGG ATTTCTGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50645678	NES13624021	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	G	G		G	A	A	G		A
ss146081743	ENSMUSSNP1069688	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss325722967	CHEV_19_15435065	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38506283					SNP	G	G	A	A	A	G	A	A	A	G	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50645678	NES13624021	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15337939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10647	CpG island 10647	1774 bp proximal
Pomc-ps1	pro-opiomelanocortin, pseudogene 1	1760 bp upstream