rs38506317 SNP Detail

Summary

• ID
  rs38506317
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61928436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAATAGTCT TTCACATTTG CTTTGTGTTT CAGACCACTG
  CAGTGTGTCT TCCTCACAGA CCGAGAAATT CGGGTTAGAT ATGTATCACA GTAGTCACAA
  W
  AAAACTTAGG CACGTTGCTC TACAATCTGT TGGCTACCCG AGTCCCCACC ACCAGGAACT
  CCATTGCTGT AGCTTTAATT ATGTAGATTT AATTATGTCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50425658	NES13465398	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38506317					SNP	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425658	NES13465398	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61928436 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	within coordinates
Rr346545	regulatory region 346545	1036 bp distal
Rr356351	regulatory region 356351	1228 bp distal