rs38507754 SNP Detail

Summary

• ID
  rs38507754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACAGCG CAGGCTAGAC
  ACCACTGAGG CCTGTAATCG CAGGAGGGCG GAAGCAGGAG AATCAGAAGT TCAAGGTCAT
  CCTTGGCTAC ATGGCAAGTT CAAGGCTAGC CTGGCCTTGC TTCAAAAAAC AAAGCCAGAA
  TAAATGACCC TGGTGGAAGC CTCTATTCTT TCCAAGGAGG TGTCTGTCTA TCCCTTGAAG
  Y
  GAGACTGATC ACCTTCAGTG GTTTTCACAG TGACTTTGTC TTCCTTCTTG GCTCACTAGT
  CCCTAAACCC TCCTTCCCAC CTGGCCCTTT AAGAGCAGCT GCTGCGACCG TACCCGGGCA
  GACCCCAGCT GCAGCCTGCA GTGTTACTAT GGAGACGGGG ACTAGCAGGA GGGGGCGGAG
  AGGTGATTGG GTCCGCGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882292	NES14894005	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	T	T	T	T	T	C	C	T
ss148400022	ENSMUSSNP5372602	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38507754					SNP	C	C	T	T	T	C	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882292	NES14894005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	10 bp proximal
Cpgi18407	CpG island 18407	1816 bp proximal
Gm71929	predicted gene, 71929	848 bp downstream
Pnma8b	PNMA family member 8B	238 bp upstream
Rr368243	regulatory region 368243	12 bp upstream
Rr642821	regulatory region 642821	1075 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	161 bp proximal
Rr642824	regulatory region 642824	1199 bp proximal
Tssr64660	transcription start site region 64660	201 bp upstream
Tssr64661	transcription start site region 64661	1250 bp upstream
Tssr70792	transcription start site region 70792	1205 bp downstream